Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8179

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16547 and 16548 are separated by 225 nucleotides mRNA_8179: 16547 - K20705 DNMBP, ARHGEF36, TUBA dynamin-binding protein, at 608,885 to 612,908 16547 mRNA_8180: 16548 - K13127 RNF113A, CWC24 RING finger protein 113A, at 613,134 to 614,430 16548

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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607,911 - +1.7
607,943 + +0.4
607,947 - -1.4
607,947 + +1.0
607,956 - +0.6
607,957 + +0.8
607,968 - -0.1
607,969 - +1.0
607,976 + -1.5
607,985 - +0.2
608,012 - +0.3
608,026 - -0.4
608,034 - +0.2
608,069 + -1.0
608,071 - -1.1
608,073 - +1.3
608,081 + +1.4
608,082 + -1.5
608,083 + +2.0
608,086 - +0.0
608,086 + +1.1
608,087 - +0.2
608,089 + -0.8
608,091 - +0.8
608,096 + +0.3
608,099 - +0.7
608,101 + -1.0
608,103 + -1.4
608,112 - -0.1
608,112 - +1.2
608,117 + +0.7
608,120 + +2.6
608,128 - +0.4
608,145 + +0.3
608,158 + +0.3
608,158 + +2.6
608,161 - -1.4
608,161 + -0.8
608,162 + +1.4
608,182 + +0.5
608,182 + -0.6
608,186 + +0.3
608,186 + +2.0
608,187 - +0.4
608,191 - +0.0
608,193 - +0.1
608,197 - +0.1
608,198 + +0.3
608,202 + +0.5
608,208 - -0.2
608,209 + +0.7
608,209 + +0.9
608,209 + -0.2
608,219 - +1.1
608,222 + +0.4
608,223 + +1.2
608,229 - +0.7
608,231 + -0.4
608,239 - +2.0
608,244 + +2.3
608,245 - +1.5
608,246 + +0.1
608,246 - +0.8
608,246 + -0.6
608,247 + +0.7
608,251 - -0.5
608,256 + +1.3
608,257 - +1.2
608,257 - -0.3
608,262 - +0.6
608,263 + -0.4
608,264 - +1.7
608,266 + +0.3
608,268 + +0.2
608,268 + -0.5
608,271 - -0.6
608,275 + -0.4
608,284 + +1.1
608,287 + +1.9
608,294 + +0.2
608,294 + -0.1
608,317 + -0.5
608,333 - -0.2
608,335 + +1.7
608,345 - +0.3
608,349 - +0.2
608,353 - +1.5
608,359 - +0.8
608,366 - +1.6
608,371 - +0.0
608,375 - +2.1
608,378 + +0.9
608,381 - +2.0
608,382 - -0.3
608,382 - -1.9
608,391 + +0.4
608,392 + -0.1
608,400 + +0.3
608,416 - +2.3
608,548 - +0.6
608,678 - +1.0
608,699 - +1.7
608,713 + +0.5
608,713 + +0.5
608,717 - +0.9
608,721 + +1.0
608,731 - +1.0
608,835 - +0.3
608,840 - +0.4
609,042 + +0.8
609,107 + -0.9
609,114 - -0.6
609,126 + -0.2
609,143 + +1.2
609,150 + +1.2
609,270 - +0.9
609,277 + -0.1
609,284 + -0.6
609,848 - 16547 mRNA_8179 0.24 +0.1
610,168 + 16547 mRNA_8179 0.32 -0.3
610,336 - 16547 mRNA_8179 0.36 +0.7
611,053 + 16547 mRNA_8179 0.54 +0.3
611,075 - 16547 mRNA_8179 0.54 +0.6
611,083 + 16547 mRNA_8179 0.55 +0.2
611,175 + 16547 mRNA_8179 0.57 -1.5
611,188 - 16547 mRNA_8179 0.57 -0.7
611,729 + 16547 mRNA_8179 0.71 +0.3
611,764 + 16547 mRNA_8179 0.72 +0.1
611,944 + 16547 mRNA_8179 0.76 +1.1
612,061 + 16547 mRNA_8179 0.79 +1.5
612,942 - +0.5
613,077 + +1.1
613,079 - +0.3

Or see this region's nucleotide sequence