Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8189

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16556 and 16557 are separated by 258 nucleotides16557 and 16558 are separated by 127 nucleotides mRNA_8188: 16556 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 625,723 to 629,622 16556 mRNA_8189: 16557 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 629,881 to 631,255 16557 mRNA_8190: 16558 - KOG2757 Mannose-6-phosphate isomerase, at 631,383 to 634,543 16558

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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629,300 + +1.4
629,320 + +0.8
629,858 + +0.1
630,012 + -1.8
630,023 - 16557 mRNA_8189 0.10 -0.6
630,334 - 16557 mRNA_8189 0.33 +0.3
630,454 - 16557 mRNA_8189 0.42 -0.3
630,461 + 16557 mRNA_8189 0.42 +0.8
630,464 + 16557 mRNA_8189 0.42 -1.6
630,605 - 16557 mRNA_8189 0.53 -0.4
630,864 - 16557 mRNA_8189 0.71 +0.6
630,892 + 16557 mRNA_8189 0.74 -1.1
631,003 - 16557 mRNA_8189 0.82 -0.2
631,168 - -0.2
631,193 + -0.3
631,193 + +0.8
631,194 + +0.9
631,319 - +0.7
631,319 - +0.7
631,331 - +1.9
631,337 + +0.0
631,358 - +0.4
631,632 - +0.9
632,238 + 16558 mRNA_8190 0.27 +0.3

Or see this region's nucleotide sequence