Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8201

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16568 and 16569 are separated by 151 nucleotides16569 and 16570 are separated by 321 nucleotides mRNA_8200: 16568 - KOG4635 Vacuolar import and degradation protein, at 658,183 to 660,127 16568 mRNA_8201: 16569 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 660,279 to 661,499 16569 mRNA_8202: 16570 - K03283 HSPA1_8 heat shock 70kDa protein 1/8, at 661,821 to 664,157 16570

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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659,318 - 16568 mRNA_8200 0.58 +0.1
659,617 - 16568 mRNA_8200 0.74 +1.2
659,912 + 16568 mRNA_8200 0.89 -0.2
660,317 + +0.6
660,327 - -0.4
660,470 - 16569 mRNA_8201 0.16 +0.4
660,478 - 16569 mRNA_8201 0.16 +0.9
660,493 - 16569 mRNA_8201 0.18 -0.4
660,494 - 16569 mRNA_8201 0.18 -0.1
660,498 + 16569 mRNA_8201 0.18 +0.9
660,501 - 16569 mRNA_8201 0.18 +0.9
660,638 + 16569 mRNA_8201 0.29 +0.6
660,641 - 16569 mRNA_8201 0.30 +0.8
660,682 + 16569 mRNA_8201 0.33 -0.1
660,787 + 16569 mRNA_8201 0.42 -0.5
660,803 - 16569 mRNA_8201 0.43 +0.3
660,809 - 16569 mRNA_8201 0.43 +0.9
661,257 + 16569 mRNA_8201 0.80 +1.3
661,351 + 16569 mRNA_8201 0.88 -0.0
661,354 - 16569 mRNA_8201 0.88 -0.8
661,375 - 16569 mRNA_8201 0.90 +0.7
661,515 - +0.3
661,530 - -0.6
661,665 + +0.8
661,666 - +0.7
661,668 + -0.8
661,672 - +0.3
661,681 - +0.5
661,682 - -0.4
661,683 + -0.8
661,688 + +0.3
661,688 - +0.7
661,692 - +0.3

Or see this region's nucleotide sequence