Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8442

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16809 and 16810 are separated by 477 nucleotides16810 and 16811 are separated by 230 nucleotides16811 and 16812 are separated by 219 nucleotides mRNA_8441: 16809 - K09274 K09274 HMG box factor, other, at 1,236,360 to 1,239,302 16809 mRNA_8442: 16810 - K19852 KIN1_2 serine/threonine protein kinase KIN1/2, at 1,239,780 to 1,244,729 16810 mRNA_8443: 16811 - Hypothetical Protein, at 1,244,960 to 1,245,436 16811 mRNA_8444: 16812 - HMMPfam-HPP family-PF04982, at 1,245,656 to 1,246,720 16812

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,238,812 + 16809 mRNA_8441 0.83 +0.8
1,238,820 + 16809 mRNA_8441 0.84 -0.0
1,238,977 - 16809 mRNA_8441 0.89 -2.9
1,239,091 + +2.0
1,239,100 - -0.4
1,239,226 + -0.3
1,239,229 - +0.4
1,239,387 + +0.1
1,239,410 + +0.3
1,239,555 - +0.0
1,239,575 - +1.3
1,239,706 - -0.6
1,239,711 + +0.0
1,239,820 - +0.8
1,239,822 - +2.5
1,239,824 - -0.6
1,239,825 + +0.1
1,239,831 + -0.6
1,239,841 - -0.1
1,239,850 - +0.7
1,239,972 - +0.9
1,239,989 - +1.8
1,240,074 + +0.8
1,240,129 + -0.1
1,240,217 - -0.0
1,240,246 - -0.7
1,240,294 + 16810 mRNA_8442 0.10 -1.5
1,240,687 - 16810 mRNA_8442 0.18 +0.1
1,240,706 - 16810 mRNA_8442 0.19 +0.8
1,240,960 - 16810 mRNA_8442 0.24 +0.8
1,241,303 - 16810 mRNA_8442 0.31 +0.3
1,241,677 - 16810 mRNA_8442 0.38 +1.9
1,241,699 + 16810 mRNA_8442 0.39 +1.1
1,242,010 + 16810 mRNA_8442 0.45 +0.3
1,242,141 + 16810 mRNA_8442 0.48 -0.1
1,242,194 - 16810 mRNA_8442 0.49 -1.3
1,242,201 + 16810 mRNA_8442 0.49 +2.3
1,242,375 + 16810 mRNA_8442 0.52 -0.5
1,242,506 + 16810 mRNA_8442 0.55 +0.1
1,242,575 - 16810 mRNA_8442 0.56 +0.2
1,242,615 - 16810 mRNA_8442 0.57 +0.9
1,243,080 - 16810 mRNA_8442 0.67 +0.6
1,243,145 + 16810 mRNA_8442 0.68 +0.9
1,243,470 + 16810 mRNA_8442 0.75 +0.6
1,243,532 + 16810 mRNA_8442 0.76 -1.0
1,243,974 + 16810 mRNA_8442 0.85 -0.2
1,243,974 + 16810 mRNA_8442 0.85 +0.1
1,244,458 - -0.3
1,244,575 + +0.7
1,244,579 - +0.1
1,244,588 - -1.5
1,244,603 + -0.5
1,244,700 - +0.4
1,245,045 - 16811 mRNA_8443 0.18 +0.1
1,245,494 + +1.1
1,245,574 + +0.9

Or see this region's nucleotide sequence