Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_41

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8408 and 8409 are separated by 327 nucleotides8409 and 8410 are separated by 199 nucleotides mRNA_40: 8408 - Hypothetical Protein, at 96,128 to 97,227 8408 mRNA_41: 8409 - K03125 TAF1 transcription initiation factor TFIID subunit 1, at 97,555 to 101,757 8409 mRNA_42: 8410 - K09494 CCT2 T-complex protein 1 subunit beta, at 101,957 to 104,570 8410

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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96,560 + 8408 mRNA_40 0.39 +0.4
96,621 - 8408 mRNA_40 0.45 +0.8
96,674 - 8408 mRNA_40 0.50 -0.8
96,754 - 8408 mRNA_40 0.57 +0.6
96,912 - 8408 mRNA_40 0.71 +1.4
97,093 - 8408 mRNA_40 0.88 +1.3
97,224 + +0.0
101,696 - -0.4

Or see this region's nucleotide sequence