Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_89

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8457 and 8458 are separated by 363 nucleotides mRNA_89: 8457 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 213,359 to 214,966 8457 mRNA_90: 8458 - Hypothetical Protein, at 215,330 to 215,955 8458

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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212,375 - -1.1
212,410 - -1.2
212,494 + +0.5
212,502 - +0.3
212,504 - +3.1
212,508 + -0.7
212,512 - -1.5
212,524 + +0.8
212,544 - +1.3
212,623 + +0.5
212,623 + -0.3
212,641 + +0.6
212,645 + -0.5
212,652 + -1.1
212,652 - -0.1
212,658 + -1.4
212,663 - +1.1
212,669 + -0.9
212,670 - +0.1
212,677 - +1.4
212,695 - -1.0
212,695 + +0.1
212,801 - -0.2
212,807 + +1.1
212,811 + +0.0
212,821 + +1.3
212,835 - +1.4
212,844 - -0.8
212,853 + +2.3
212,855 + +0.1
212,873 + -0.6
212,875 - -1.2
212,880 + +0.2
212,880 + +0.0
212,900 - -3.4
212,901 - +1.3
212,906 - -1.8
212,933 - -0.8
212,940 - +1.8
212,950 - -0.6
212,961 - +0.5
212,983 + +0.3
213,005 - +0.8
213,025 - +1.1
213,029 + -1.2
213,039 - +0.2
213,043 + +0.7
213,053 + -0.1
213,059 - +1.0
213,066 - +0.4
213,067 + +0.9
213,073 + +0.2
213,074 + -0.5
213,099 + +0.1
213,110 - +0.8
213,112 + -0.5
213,118 + +0.2
213,122 + +0.1
213,125 - +0.9
213,126 + -1.2
213,126 + -0.6
213,127 - -0.3
213,139 + -0.1
213,141 - -0.3
213,156 + +0.2
213,158 + +0.6
213,159 + -1.0
213,165 - -0.7
213,168 - -1.2
213,175 - +2.0
213,292 - +0.4
213,334 + +0.4
213,340 - +0.3
213,345 + +0.7
213,361 + +0.4
213,367 + -0.1
213,459 - +0.4
213,460 + -0.1
213,466 - +0.9
213,475 + -1.4
213,484 + -0.1
213,507 - -1.0
213,510 + -0.6
213,679 - 8457 mRNA_89 0.20 +0.0
213,762 - 8457 mRNA_89 0.25 +2.7
213,793 + 8457 mRNA_89 0.27 +0.6
214,219 + 8457 mRNA_89 0.53 -0.3
214,384 + 8457 mRNA_89 0.64 +0.6
214,528 - 8457 mRNA_89 0.73 +0.5
214,647 - 8457 mRNA_89 0.80 +0.1
215,100 + -0.8
215,561 - 8458 mRNA_90 0.37 -1.0
215,827 + 8458 mRNA_90 0.79 -0.7
215,848 + 8458 mRNA_90 0.83 -0.1
215,849 - 8458 mRNA_90 0.83 +2.8

Or see this region's nucleotide sequence