Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_100

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8467 and 8468 are separated by 682 nucleotides8468 and 8469 are separated by 605 nucleotides mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235,594 to 240,654 8467 mRNA_100: 8468 - K03686 dnaJ molecular chaperone DnaJ, at 241,337 to 243,142 8468 mRNA_101: 8469 - K18719 NUP82 nucleoporin NUP82, at 243,748 to 246,867 8469

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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240,479 - -0.5
240,747 + -0.6
243,486 - +0.4
243,503 + -1.7
243,509 - -0.7
243,512 + -0.4
243,643 - +0.3
243,649 + -0.7
243,658 + +0.6

Or see this region's nucleotide sequence