Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_242

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8609 and 8610 are separated by 609 nucleotides8610 and 8611 are separated by 231 nucleotides mRNA_241: 8609 - BLAST 60s ribosomal protein l25 [Moniliophthora roreri ..., at 590,351 to 590,973 8609 mRNA_242: 8610 - HMMPfam-CorA-like Mg2+ transporter protein-PF01544,SUPERFAMILY--SSF143865, at 591,583 to 594,875 8610 mRNA_243: 8611 - HMMPfam-Replication factor A protein 3-PF08661,SUPERFAMILY--SSF50249, at 595,107 to 595,773 8611

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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591,023 - +2.3
591,171 - +0.4
591,178 + -1.0
591,189 - +1.9
591,207 + +0.9
591,339 - +0.8
591,353 + +0.3
591,488 + +0.2
591,495 - +0.5
591,504 - +0.6
594,897 - +1.7
594,980 - +0.3
595,005 + +0.9
595,049 + +1.0
595,057 - +2.0
595,775 - +0.3

Or see this region's nucleotide sequence