Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_366

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8733 and 8734 are separated by 280 nucleotides8734 and 8735 are separated by 569 nucleotides mRNA_365: 8733 - K17945 TPM1_2 tropomyosin, fungi type, at 848,017 to 848,980 8733 mRNA_366: 8734 - HMMPfam-Thioredoxin-like-PF13905,SUPERFAMILY--SSF52833, at 849,261 to 850,411 8734 mRNA_367: 8735 - ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 850,981 to 853,734 8735

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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849,294 + +0.3
850,015 - 8734 mRNA_366 0.66 -0.0
850,162 - 8734 mRNA_366 0.78 -1.6
850,460 - +0.1
850,470 + +0.7
850,483 + -1.1
850,486 + +0.1
850,599 - +0.0
850,605 - -0.5
850,619 - -0.8
850,621 + +1.5
850,751 + +2.1
850,776 - -1.1
850,783 - -0.2
850,791 + +0.2
850,795 - -0.6
850,810 - -0.3
850,814 + +1.2
850,817 - +0.7
850,828 + -0.4
850,932 + +0.9
851,013 + +0.7
851,084 + -1.7
851,144 - -0.9
851,255 - +0.4

Or see this region's nucleotide sequence