Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_395

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8762 and 8763 are separated by 520 nucleotides8763 and 8764 are separated by 272 nucleotides mRNA_394: 8762 - KOG0714 Molecular chaperone (DnaJ superfamily), at 916,716 to 918,157 8762 mRNA_395: 8763 - KOG2262 Sexual differentiation process protein ISP4, at 918,678 to 921,418 8763 mRNA_396: 8764 - K07478 ycaJ putative ATPase, at 921,691 to 924,142 8764

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
918,268 - +0.8
918,387 - +2.0
918,397 + +0.4
918,410 - +0.1
918,412 - +0.6
918,437 + -0.1
918,548 + -0.5
918,563 - -1.3
918,692 - -0.5
918,693 - +1.1
918,693 + -0.8
918,713 + -0.3
918,817 + +1.1
918,843 + -1.1
918,994 - 8763 mRNA_395 0.12 +1.6
918,997 - 8763 mRNA_395 0.12 +0.4
919,147 - 8763 mRNA_395 0.17 +0.2
919,428 + 8763 mRNA_395 0.27 -1.0
920,162 + 8763 mRNA_395 0.54 +0.6
920,445 - 8763 mRNA_395 0.64 +0.4
920,521 - 8763 mRNA_395 0.67 -1.4
920,584 - 8763 mRNA_395 0.70 -1.1
921,273 - -1.1
921,349 + +2.0
921,462 + +1.1
921,462 + +2.0
921,758 - -0.3
921,779 + +0.7
921,915 + +1.0
921,944 + 8764 mRNA_396 0.10 -0.9
922,038 - 8764 mRNA_396 0.14 -0.1
922,047 - 8764 mRNA_396 0.15 +0.1
922,357 - 8764 mRNA_396 0.27 +1.1

Or see this region's nucleotide sequence