Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_484

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8851 and 8852 are separated by 638 nucleotides8852 and 8853 are separated by 412 nucleotides mRNA_483: 8851 - KOG1339 Aspartyl protease, at 1,150,104 to 1,151,338 8851 mRNA_484: 8852 - Hypothetical Protein, at 1,151,977 to 1,154,074 8852 mRNA_485: 8853 - K13278 ASPG 60kDa lysophospholipase, at 1,154,487 to 1,156,857 8853

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,150,978 - 8851 mRNA_483 0.71 +1.0
1,151,018 + 8851 mRNA_483 0.74 +2.0
1,151,120 - 8851 mRNA_483 0.82 +0.1
1,151,171 + 8851 mRNA_483 0.86 +0.5
1,151,301 - -1.2
1,151,308 + -1.6
1,151,338 + +1.9
1,151,422 + +0.7
1,151,428 - +0.0
1,151,450 - +0.3
1,151,450 + +0.4
1,151,452 + -0.0
1,151,453 + +0.3
1,151,460 - -0.9
1,151,472 + +0.9
1,151,484 + +0.4
1,151,492 + +1.5
1,151,506 - +0.1
1,151,506 - -1.0
1,151,524 - +0.5
1,151,526 + +0.3
1,151,546 - +1.5
1,151,546 - -1.7
1,151,599 + +0.2
1,151,634 - -0.4
1,151,775 + +0.1
1,152,216 + 8852 mRNA_484 0.11 -0.2
1,152,220 + 8852 mRNA_484 0.12 -0.7
1,152,391 + 8852 mRNA_484 0.20 +0.3
1,153,411 + 8852 mRNA_484 0.68 -2.6
1,153,513 - 8852 mRNA_484 0.73 +0.7
1,153,516 + 8852 mRNA_484 0.73 +0.2
1,153,541 + 8852 mRNA_484 0.75 -0.7
1,153,645 - 8852 mRNA_484 0.80 +0.2
1,153,653 + 8852 mRNA_484 0.80 -0.7
1,153,653 - 8852 mRNA_484 0.80 -0.6
1,153,681 - 8852 mRNA_484 0.81 +0.1
1,153,684 + 8852 mRNA_484 0.81 +1.6
1,153,687 - 8852 mRNA_484 0.82 +0.4
1,153,693 + 8852 mRNA_484 0.82 -1.1
1,153,709 - 8852 mRNA_484 0.83 +0.7
1,153,714 - 8852 mRNA_484 0.83 +0.4
1,153,718 + 8852 mRNA_484 0.83 -0.6
1,153,724 + 8852 mRNA_484 0.83 +1.5
1,153,731 - 8852 mRNA_484 0.84 +2.7
1,153,732 + 8852 mRNA_484 0.84 +1.4
1,153,735 - 8852 mRNA_484 0.84 -0.3
1,153,738 + 8852 mRNA_484 0.84 +1.6
1,153,748 - 8852 mRNA_484 0.84 -0.1
1,153,751 - 8852 mRNA_484 0.85 +0.7
1,153,753 - 8852 mRNA_484 0.85 -0.3
1,153,769 + 8852 mRNA_484 0.85 +2.3
1,153,771 + 8852 mRNA_484 0.86 +0.7
1,153,783 + 8852 mRNA_484 0.86 -1.0
1,153,795 - 8852 mRNA_484 0.87 +1.0
1,153,798 - 8852 mRNA_484 0.87 +0.8
1,153,804 + 8852 mRNA_484 0.87 +0.1
1,153,814 + 8852 mRNA_484 0.88 +0.1
1,153,814 + 8852 mRNA_484 0.88 -1.2
1,153,877 - +0.0
1,153,884 + +3.1
1,153,902 + +2.0
1,153,902 + +0.5
1,153,920 - -0.3
1,153,943 + -0.1
1,153,949 + -0.3
1,153,962 + +0.0
1,153,964 + -0.1
1,153,965 + +0.5
1,153,979 - +0.0
1,154,003 - -0.4
1,154,027 + +0.8
1,154,034 + -0.5
1,154,089 - +1.0
1,154,099 - -0.2
1,154,128 + +0.9
1,154,136 + -1.1
1,154,269 - +0.6
1,154,270 - -0.8
1,154,411 + -0.6
1,154,414 - -0.9
1,154,429 - +0.0
1,154,430 + +0.2
1,154,472 - -1.0
1,154,505 - +0.9
1,154,511 + +0.4
1,154,521 + -0.6
1,154,532 - +2.2
1,154,551 + +1.5
1,154,561 - +0.0
1,154,612 + +0.1
1,154,615 + +1.4
1,154,622 + -0.9
1,154,623 + -2.9
1,154,628 + -1.4
1,154,809 - 8853 mRNA_485 0.14 +0.6
1,154,863 - 8853 mRNA_485 0.16 +0.4
1,154,870 - 8853 mRNA_485 0.16 +0.0
1,154,909 + 8853 mRNA_485 0.18 +0.7

Or see this region's nucleotide sequence