Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_597

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8965 and 8966 are separated by 910 nucleotides mRNA_597: 8965 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 1,435,317 to 1,436,977 8965 mRNA_598: 8966 - ProSiteProfiles-F-box domain profile.-PS50181, at 1,437,888 to 1,441,324 8966

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,434,639 + -0.4
1,434,768 - -0.4
1,434,961 + -1.4
1,435,058 + -2.3
1,435,231 + -0.0
1,435,246 - -0.2
1,435,370 - +0.6
1,435,514 - 8965 mRNA_597 0.12 +2.1
1,435,663 - 8965 mRNA_597 0.21 +0.5
1,435,957 - 8965 mRNA_597 0.39 +0.3
1,436,213 - 8965 mRNA_597 0.54 +0.1
1,436,632 - 8965 mRNA_597 0.79 +1.6
1,436,952 - +2.9
1,436,954 + -0.8
1,437,210 - +1.2
1,437,218 + -0.9
1,437,219 - +0.5
1,437,222 + +1.1
1,437,223 + +0.3
1,437,242 + -0.1
1,437,243 - +0.7
1,437,255 - +0.3
1,437,281 - +0.1
1,437,295 - +0.5
1,437,301 + -0.1
1,437,321 - +0.3
1,437,329 - +0.1
1,437,334 + +1.9
1,437,349 + +0.6
1,437,360 - -2.2
1,437,383 + +0.3
1,437,399 - +1.4
1,437,401 - -1.5
1,437,402 - -0.5
1,437,456 - +0.0
1,437,505 + +0.9
1,437,534 - +0.5
1,437,558 + -0.1
1,437,558 + -3.0
1,437,716 - +0.1
1,437,827 + -0.5
1,437,862 + -0.9

Or see this region's nucleotide sequence