Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_802

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9169 and 9170 are separated by 513 nucleotides9170 and 9171 are separated by 390 nucleotides mRNA_801: 9169 - SUPERFAMILY--SSF52047, at 1,905,465 to 1,906,798 9169 mRNA_802: 9170 - SUPERFAMILY--SSF52047, at 1,907,312 to 1,908,570 9170 mRNA_803: 9171 - HMMPfam-Velvet factor-PF11754, at 1,908,961 to 1,910,410 9171

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,906,327 - 9169 mRNA_801 0.65 +0.1
1,906,610 - 9169 mRNA_801 0.86 -0.1
1,906,761 + +0.5
1,906,810 + +0.4
1,906,894 - +0.0
1,906,895 + +0.8
1,906,911 - -0.2
1,907,185 + +0.2
1,907,186 - +0.6
1,907,217 + -0.7
1,907,224 + +0.0
1,907,320 - -0.6
1,907,326 - -0.8
1,907,329 - +0.1
1,907,399 - +0.3
1,908,217 - 9170 mRNA_802 0.72 +0.3
1,909,528 - 9171 mRNA_803 0.39 -0.4

Or see this region's nucleotide sequence