Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_904

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9272 and 9273 are separated by 268 nucleotides mRNA_904: 9272 - K04705 STAM signal transducing adaptor molecule, at 2,158,067 to 2,161,022 9272 mRNA_905: 9273 - KOG4711 Predicted membrane protein, at 2,161,291 to 2,166,616 9273

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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2,157,098 - -0.9
2,157,210 + -0.4
2,157,231 + +0.2
2,157,273 + -1.2
2,157,311 + -0.8
2,157,357 - +0.7
2,157,379 - +1.5
2,157,391 - +0.1
2,157,392 + -0.1
2,157,397 - +1.1
2,157,400 - +1.5
2,157,423 + -0.1
2,157,450 - +0.0
2,157,523 + -2.6
2,157,542 + +1.5
2,157,553 + -0.9
2,157,590 - +1.0
2,157,681 - -0.9
2,157,812 - +1.3
2,157,814 - +2.2
2,157,833 + -0.4
2,157,856 - -0.8
2,157,982 - +1.0
2,157,982 - +2.6
2,157,988 + -0.7
2,157,993 + -1.1
2,158,403 + 9272 mRNA_904 0.11 -2.3
2,159,417 - 9272 mRNA_904 0.46 -0.4
2,160,248 + 9272 mRNA_904 0.74 +0.2
2,160,416 - 9272 mRNA_904 0.79 -0.6
2,160,729 + -0.4
2,161,026 - -0.5
2,161,157 - +0.4
2,161,163 + -0.9
2,161,186 + +1.4
2,161,211 - +1.3
2,161,302 - +0.5
2,161,323 - -0.0
2,161,324 + +0.9
2,161,327 - -0.9
2,161,337 - -0.4
2,161,358 - -0.7
2,161,364 + -0.1
2,161,370 + +1.9
2,161,473 - -1.7
2,161,578 + -0.6
2,161,607 - +0.2
2,161,638 + -0.0
2,161,828 - 9273 mRNA_905 0.10 -0.0

Or see this region's nucleotide sequence