Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1 + +1.0
1 + -0.4
1 + +1.0
1 + +0.7
1 + +1.8
2 + +0.5
2 + -0.6
5 + +0.8
18 + +0.1
30 + -0.0
37 + +0.3
37 + +2.1
41 + -0.1
42 + +0.5
44 + -0.0
49 + +0.5
49 + -0.1
50 + -0.0
54 + +0.5
58 - -0.0
60 - -0.6
60 + +0.7
60 - -1.3
61 - +1.7
61 + -1.0
63 + +0.1
63 + -1.0
63 + +2.1
63 + +1.8
63 + +0.6
63 + -0.2
64 + -1.9
66 - -0.2
66 + +0.3
70 + +0.7
70 + -1.4
70 - +0.2
71 + +1.2
73 + +0.5
75 - -1.3
77 - -3.6
78 + +0.1
78 - -2.5
78 + -0.5
78 + +0.4
78 + -1.0
78 + -0.4
78 + +0.1
78 + -1.2
78 + +0.6
79 + +0.3
81 - +0.4
81 - -1.0
82 + -1.0
85 + +0.4
104 + +0.3
126 + -0.3
126 + +0.6
128 - +0.3
135 + +0.2
142 + +0.4
150 + +0.4
154 + +0.2
157 + -2.5
171 - +0.5
171 + +0.6
172 + +1.9
172 + +0.5
175 - -0.7
176 - +0.2
177 - -1.1
177 - +0.1
191 - -0.1
192 + -0.5
192 + -1.4
192 + +0.6
193 + +1.4
193 + -0.4
193 + +0.5
198 - +0.5
218 + +0.3
225 + +0.7
235 + -0.4
242 + +0.7
263 - +0.1
293 + -0.6
303 + +0.3
333 - -0.2
339 - -0.4
348 + -0.1
349 + -1.6
377 - -0.8
381 - +0.3
469 + -1.0
487 - 9298 mRNA_930 0.10 -0.6
722 + 9298 mRNA_930 0.29 -0.5
1,641 - -0.5
1,656 - -0.7
1,768 - -1.9
1,778 - +0.6
1,794 + +2.2

Or see this region's nucleotide sequence