Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_990

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9357 and 9358 are separated by 396 nucleotides9358 and 9359 are separated by 419 nucleotides mRNA_989: 9357 - Hypothetical Protein, at 144,518 to 146,452 9357 mRNA_990: 9358 - Hypothetical Protein, at 146,849 to 147,409 9358 mRNA_991: 9359 - HMMPfam-Uncharacterised protein family, YAP/Alf4/glomulin-PF08568, at 147,829 to 149,137 9359

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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146,058 - 9357 mRNA_989 0.80 -0.6
146,077 + 9357 mRNA_989 0.81 -0.3
146,195 - 9357 mRNA_989 0.87 -0.3
146,201 + 9357 mRNA_989 0.87 -0.5
146,207 - 9357 mRNA_989 0.87 -0.0
146,344 - +0.5
146,344 - +0.5
146,397 + +0.8
146,501 + +1.2
146,504 + +0.6
146,513 - +1.1
146,532 - -0.6
146,546 - -2.0
146,548 - +0.3
146,583 + -0.2
146,585 - -0.3
146,588 + -0.8
146,588 - -0.1
146,589 + +0.2
146,596 + -0.1
146,601 + +0.8
146,605 - +1.1
146,605 - +0.7
146,608 + +0.3
146,610 + -0.0
146,634 - +0.4
146,649 + -0.9
146,649 + -0.3
146,662 - -0.6
146,824 + +0.1
146,967 - 9358 mRNA_990 0.21 -1.5
146,967 - 9358 mRNA_990 0.21 -1.2
147,407 - -0.4
148,113 + 9359 mRNA_991 0.22 -0.6

Or see this region's nucleotide sequence