Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_993

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9361 and 9362 are separated by 704 nucleotides mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151,634 to 153,360 9361 mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154,065 to 154,836 9362

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
152,336 - 9361 mRNA_993 0.41 -0.3
152,532 - 9361 mRNA_993 0.52 -0.6
152,682 + 9361 mRNA_993 0.61 -0.9
152,754 - 9361 mRNA_993 0.65 -0.7
152,775 + 9361 mRNA_993 0.66 -0.9
152,790 + 9361 mRNA_993 0.67 -0.2
152,794 + 9361 mRNA_993 0.67 +2.3
152,807 - 9361 mRNA_993 0.68 +0.8
152,859 + 9361 mRNA_993 0.71 -1.3
152,951 - 9361 mRNA_993 0.76 +0.5
152,978 + 9361 mRNA_993 0.78 -0.3
152,982 + 9361 mRNA_993 0.78 -2.5
152,992 + 9361 mRNA_993 0.79 -0.4
153,130 - 9361 mRNA_993 0.87 -0.2
153,135 - 9361 mRNA_993 0.87 -0.2
153,155 - 9361 mRNA_993 0.88 +0.1
153,232 - +1.1
153,251 + +0.3
153,277 - -0.5
153,285 - +0.7
153,286 + -1.0
153,305 - +1.3
153,309 + -0.5
153,341 + -0.4
153,435 - +1.4
153,442 + -1.6
153,454 + -0.6
153,467 - +1.0
153,470 + -0.3
153,482 + +0.3
153,488 - +0.3
153,489 - +1.0
153,490 - +0.7
153,490 - -1.0
153,528 + +1.1
153,546 - -1.1
153,578 + +0.2
153,598 - -1.2
153,685 + -1.9
153,750 - +0.4
153,877 + -0.6
153,998 + -1.2
154,033 + -0.5
154,080 - +1.5
154,093 + -0.8
154,180 - 9362 mRNA_994 0.15 -1.0

Or see this region's nucleotide sequence