Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1010

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9377 and 9378 are separated by 659 nucleotides mRNA_1009: 9377 - K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase, at 194,159 to 197,453 9377 mRNA_1010: 9378 - K16569 TUBGCP2, GCP2 gamma-tubulin complex component 2, at 198,113 to 201,234 9378

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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197,224 + -4.5
197,237 - -1.5
197,345 + -2.8
197,449 - -1.6
197,506 - +1.2
201,349 + -0.6
201,370 - +0.0
201,477 - -0.5
201,497 - -1.0
201,522 + +0.5
201,530 + +0.4
201,531 + -0.1
201,544 - +0.1
201,548 + +1.0
201,673 + +0.1
201,683 - +0.3
201,688 + +1.6
201,690 + -0.4
201,708 - +1.0
201,835 + +0.1
201,839 - -0.1
201,966 - +0.3
202,107 - -0.2
202,111 - -0.3
202,112 + +0.2
202,135 + -0.7
202,142 - +0.8

Or see this region's nucleotide sequence