Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1177

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9544 and 9545 are separated by 590 nucleotides9545 and 9546 are separated by 161 nucleotides mRNA_1176: 9544 - Hypothetical Protein, at 578,866 to 579,597 9544 mRNA_1177: 9545 - K15326 TSEN54 tRNA-splicing endonuclease subunit Sen54, at 580,188 to 581,963 9545 mRNA_1178: 9546 - Hypothetical Protein, at 582,125 to 583,749 9546

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
579,377 + 9544 mRNA_1176 0.70 -0.1
579,410 + 9544 mRNA_1176 0.74 +0.2
579,415 - 9544 mRNA_1176 0.75 +1.0
579,422 - 9544 mRNA_1176 0.76 +1.5
579,547 + +1.1
579,554 - +0.2
579,555 + -1.5
579,934 - +1.0
579,955 - +0.0
579,957 - +0.4
579,963 + +0.4
580,089 - +2.3
582,045 + +1.0
582,060 - +0.3
582,084 + +2.1
582,207 + +0.3
582,254 + -0.2
582,552 - 9546 mRNA_1178 0.26 -0.5

Or see this region's nucleotide sequence