Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1278

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9645 and 9646 are separated by 606 nucleotides9646 and 9647 are separated by 795 nucleotides mRNA_1277: 9645 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 817,751 to 818,897 9645 mRNA_1278: 9646 - KOG1414 Transcriptional activator FOSB/c-Fos and related bZIP transcription factors, at 819,504 to 821,830 9646 mRNA_1279: 9647 - BLAST family 16 carbohydrate esterase [Melampsora laric..., at 822,626 to 824,265 9647

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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818,512 + 9645 mRNA_1277 0.66 +0.6
818,527 - 9645 mRNA_1277 0.68 -0.4
818,533 + 9645 mRNA_1277 0.68 +0.2
818,536 + 9645 mRNA_1277 0.68 -2.2
818,789 - -0.7
818,940 + -0.0
818,998 - +0.0
819,004 + -0.3
819,103 + +1.9
819,180 + +1.7
819,274 - -0.4
819,447 - +0.2
819,829 - 9646 mRNA_1278 0.14 +0.7
819,837 + 9646 mRNA_1278 0.14 +0.3
820,078 - 9646 mRNA_1278 0.25 -0.2
820,460 - 9646 mRNA_1278 0.41 -3.0
820,460 - 9646 mRNA_1278 0.41 -1.5
821,163 - 9646 mRNA_1278 0.71 +1.0
821,247 - 9646 mRNA_1278 0.75 -0.4
821,288 - 9646 mRNA_1278 0.77 +2.5
821,288 + 9646 mRNA_1278 0.77 +0.9
821,415 - 9646 mRNA_1278 0.82 +0.5
821,428 + 9646 mRNA_1278 0.83 -0.0
821,550 - 9646 mRNA_1278 0.88 -0.2
821,561 + 9646 mRNA_1278 0.88 +0.0
821,569 - 9646 mRNA_1278 0.89 -0.0
821,578 - 9646 mRNA_1278 0.89 -1.4
821,578 + 9646 mRNA_1278 0.89 -0.8
821,589 - 9646 mRNA_1278 0.90 -1.2
821,706 - -0.8
821,717 - +0.0
821,730 + +0.1
821,744 + +1.1
821,748 + +0.7
821,752 - +0.4
821,755 + +1.0
821,764 + -0.2
821,835 + +0.1
821,887 + -1.3
821,911 + -0.1
821,919 + +0.4
821,919 + +0.4
821,921 + +0.1
821,922 - -0.4
821,923 - -0.1
821,923 + +0.1
821,924 + +0.1
821,927 + -0.2
821,928 + -0.2
821,929 - -1.6
821,931 + +0.5
821,939 - -0.6
821,940 - -0.5
821,941 - +0.6
821,941 + -1.6
821,965 + -0.0
821,970 - +0.1
821,975 - +0.1
821,983 - +0.2
821,996 - -0.7
822,000 - +0.2
822,004 - +0.2
822,005 - +0.1
822,091 - +0.4
822,179 - -1.7
822,180 + +0.3
822,189 - -0.3
822,208 - +2.3
822,214 - +0.9
822,214 - +0.7
822,231 - +0.2
822,235 - -0.4
822,242 + +2.2
822,242 + -1.4
822,249 + +0.3
822,250 + +0.4
822,257 - +1.1
822,259 + +1.6
822,262 + -0.4
822,266 - -0.5
822,375 + -0.2
822,377 + +0.4

Or see this region's nucleotide sequence