Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1309

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9676 and 9677 are separated by 752 nucleotides9677 and 9678 are separated by 275 nucleotides mRNA_1308: 9676 - KOG0342 ATP-dependent RNA helicase pitchoune, at 890,462 to 892,850 9676 mRNA_1309: 9677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 893,603 to 895,450 9677 mRNA_1310: 9678 - KOG3022 Predicted ATPase, nucleotide-binding, at 895,726 to 897,428 9678

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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893,096 - +0.9
893,132 + +0.8
894,740 - 9677 mRNA_1309 0.62 +0.6
895,155 + 9677 mRNA_1309 0.84 +0.2
895,304 - +0.4
895,314 - -0.2
895,322 + -0.0
895,325 - +0.4
895,423 + +0.7
895,491 - +0.5
895,494 - +0.4
895,608 + +0.7
895,610 - -2.7
895,612 + +0.3
895,613 + -0.2
895,643 + -0.2
895,647 + +1.8
895,678 + -0.7
895,695 + +0.0
895,724 - +0.5

Or see this region's nucleotide sequence