Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1320

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9688 and 9689 are separated by 872 nucleotides mRNA_1320: 9688 - K00384 trxB thioredoxin reductase (NADPH), at 921,443 to 923,748 9688 mRNA_1321: 9689 - K01687 ilvD dihydroxy-acid dehydratase, at 924,621 to 927,018 9689

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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920,784 + -0.1
921,063 + -0.0
923,535 + +0.1
923,550 + +0.8
923,664 - -0.1
923,669 + +0.4
923,681 - +0.1
923,684 + -1.0
923,688 + +2.1
923,691 - -0.1
923,699 - +2.6
923,699 - +1.4
923,704 - +2.0
923,705 - -0.5
923,709 + +0.1
923,709 + -0.8
923,710 + +0.1
923,724 + +2.8
923,817 + -0.5
923,916 - -0.5
923,925 - +0.9
923,930 - -2.1
923,939 - -1.5
923,943 + -0.2
923,950 + -1.3
923,955 + -0.1
923,963 + +0.3
923,964 + +0.1
923,970 - -0.0
923,970 - +0.3
923,975 + +1.1
923,979 - -0.0
924,100 + -0.3
924,163 + +0.4
924,251 - -0.8

Or see this region's nucleotide sequence