Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1359

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9727 and 9728 are separated by 319 nucleotides mRNA_1359: 9727 - K06018 PPN1 endopolyphosphatase, at 85,771 to 88,302 9727 mRNA_1360: 9728 - K01054 MGLL acylglycerol lipase, at 88,622 to 90,157 9728

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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84,835 - +0.5
84,864 - +2.5
84,865 + +0.2
84,873 + +0.1
84,898 + -0.6
84,902 + +0.7
84,921 + +0.2
84,922 + +0.0
84,923 + +0.2
84,925 - +0.6
84,925 - +0.4
84,934 + +0.3
84,942 - +1.5
85,049 - +0.8
85,051 - +0.1
85,060 - +0.7
85,064 + -0.5
85,087 - +0.5
85,197 - +0.8
85,217 - +0.0
85,217 + +0.1
85,223 + +1.1
85,341 - -0.2
85,358 + +0.1
85,363 - +0.1
85,363 + -0.6
85,369 + -0.2
85,375 - -0.3
85,375 + +0.2
85,376 - +0.3
85,377 + -0.5
85,388 - +0.4
85,399 - +0.0
85,399 + -0.5
85,403 - -0.0
85,404 + +1.0
85,570 - +1.0
85,584 + -1.3
85,602 + +0.3
85,682 + +0.7
85,867 + +0.6
85,873 + +0.6
86,755 + 9727 mRNA_1359 0.39 -0.4
86,836 - 9727 mRNA_1359 0.42 -0.6
87,112 + 9727 mRNA_1359 0.53 +0.8
87,145 - 9727 mRNA_1359 0.54 +1.6
87,215 + 9727 mRNA_1359 0.57 -0.5
87,566 + 9727 mRNA_1359 0.71 -0.0
87,587 - 9727 mRNA_1359 0.72 +0.1
87,713 - 9727 mRNA_1359 0.77 +0.8
87,736 + 9727 mRNA_1359 0.78 -0.5
87,769 + 9727 mRNA_1359 0.79 -1.4
88,292 + -0.9
88,298 - -1.2
88,415 - +0.2
88,416 + +0.1
88,434 - -0.4
88,457 - +1.6
88,468 + -0.6
88,568 - +0.7
88,576 - +1.2
88,585 - +0.5
88,603 + +0.2
88,604 - -0.8
88,727 + +0.2
88,736 - +0.6
89,033 - 9728 mRNA_1360 0.27 +0.4
89,050 - 9728 mRNA_1360 0.28 -0.1

Or see this region's nucleotide sequence