Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1418

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9785 and 9786 are separated by 633 nucleotides9786 and 9787 are separated by 453 nucleotides mRNA_1417: 9785 - K01567 pdaA peptidoglycan-N-acetylmuramic acid deacetylase, at 227,247 to 228,373 9785 mRNA_1418: 9786 - HMMPfam-Fungal protein of unknown function (DUF1748)-PF08520, at 229,007 to 229,464 9786 mRNA_1419: 9787 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 229,918 to 235,537 9787

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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228,236 + 9785 mRNA_1417 0.88 -3.1
228,244 + 9785 mRNA_1417 0.88 +1.6
228,390 + -1.7
228,529 + +0.2
228,535 + +1.4
228,559 + +0.9
228,832 - -0.3
228,961 - -0.5
228,987 - -0.1
229,106 + 9786 mRNA_1418 0.22 +0.1
229,114 + 9786 mRNA_1418 0.23 -0.1
229,246 + 9786 mRNA_1418 0.52 +0.8
229,410 + 9786 mRNA_1418 0.88 +0.6
229,526 - -0.3
229,856 - +1.2
229,971 - +1.8
229,995 - -0.4
230,154 + +0.4
230,175 + -0.1
230,280 - -0.1
230,411 - +1.2
230,443 + +1.4

Or see this region's nucleotide sequence