Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1493

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9860 and 9861 are separated by 137 nucleotides mRNA_1492: 9860 - K12855 PRPF6, PRP6 pre-mRNA-processing factor 6, at 434,341 to 437,683 9860 mRNA_1493: 9861 - KOG1981 SOK1 kinase belonging to the STE20/SPS1/GC kinase family, at 437,821 to 440,939 9861

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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437,829 - +0.6
437,836 + -0.5
438,107 - -0.6
438,253 + 9861 mRNA_1493 0.14 -0.1
438,265 + 9861 mRNA_1493 0.14 -0.7
438,349 - 9861 mRNA_1493 0.17 -0.4
438,527 - 9861 mRNA_1493 0.23 +0.7
438,544 - 9861 mRNA_1493 0.23 +2.1
438,629 - 9861 mRNA_1493 0.26 +1.1
439,559 - 9861 mRNA_1493 0.56 -0.6
439,862 + 9861 mRNA_1493 0.65 +0.8
440,023 - 9861 mRNA_1493 0.71 -0.8
440,170 + 9861 mRNA_1493 0.75 -0.1
440,396 - 9861 mRNA_1493 0.83 -1.5
440,556 - 9861 mRNA_1493 0.88 -0.3
441,030 - +1.9
441,152 - -1.2
441,170 + +1.3
441,184 - -0.3
441,207 + -0.6
441,239 + -2.2
441,317 - -1.4
441,336 + +0.3
441,345 - +0.2
441,353 + +0.8
441,354 + +1.4
441,370 - +0.2
441,375 - +0.9
441,376 + +0.3
441,376 + -0.2
441,379 - +0.3
441,384 + +0.6
441,387 - -0.8
441,433 + +0.7
441,460 + -0.5
441,478 - +0.7
441,498 - -0.8
441,504 - +1.6
441,509 - +0.1
441,520 + -2.4
441,527 + -0.1
441,612 - -0.2
441,622 + -0.2
441,756 - -0.4
441,821 - -0.1
441,822 + +0.1
441,825 - +0.1
441,853 - -0.9

Or see this region's nucleotide sequence