Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1581

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9948 and 9949 are separated by 523 nucleotides9949 and 9950 are separated by 597 nucleotides mRNA_1580: 9948 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 650,033 to 651,263 9948 mRNA_1581: 9949 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 651,787 to 652,843 9949 mRNA_1582: 9950 - K01381 PEP4 saccharopepsin, at 653,441 to 655,468 9950

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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650,865 + 9948 mRNA_1580 0.68 +0.7
651,318 - -0.9
651,450 - +0.1
651,564 - +1.0
651,597 + +2.0
651,609 - -0.1
651,609 + +2.5
651,629 - +0.9
651,638 - -1.5
651,640 + +0.1
651,645 - -0.3
651,648 - +0.3
651,653 + -0.7
651,659 + -0.9
651,671 - +0.2
651,677 + -0.9
651,678 - +1.0
651,680 + +1.6
651,844 - +1.0
651,851 + +0.1
651,960 + 9949 mRNA_1581 0.16 -1.2
651,969 + 9949 mRNA_1581 0.17 -0.7
652,144 - 9949 mRNA_1581 0.34 -0.7
653,037 - -0.5
653,309 - +2.4
653,356 + -1.6

Or see this region's nucleotide sequence