Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1654

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10021 and 10022 are separated by 636 nucleotides mRNA_1653: 10021 - Hypothetical Protein, at 814,030 to 815,626 10021 mRNA_1654: 10022 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 816,263 to 817,600 10022

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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815,337 + 10021 mRNA_1653 0.82 +0.2
815,879 - +0.3
816,315 - +0.2
816,518 - 10022 mRNA_1654 0.19 +2.1
817,331 - 10022 mRNA_1654 0.80 +0.4
818,392 - +0.8
818,515 + -0.4
818,519 + +0.0
818,550 + +0.8

Or see this region's nucleotide sequence