Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1707

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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215 + +0.6
220 - -0.5
234 + +2.5
254 - +1.1
283 + +0.8
304 + +2.6
322 + +0.1
324 + +0.4
427 + +0.3
453 + 10074 mRNA_1706 0.13 -0.1
465 - 10074 mRNA_1706 0.14 +1.0
482 + 10074 mRNA_1706 0.16 +0.2
493 - 10074 mRNA_1706 0.18 +2.1
647 + 10074 mRNA_1706 0.36 -0.3
683 - 10074 mRNA_1706 0.40 +0.1
809 + 10074 mRNA_1706 0.55 +0.2
842 - 10074 mRNA_1706 0.59 -0.8
844 + 10074 mRNA_1706 0.59 +0.9
848 - 10074 mRNA_1706 0.59 +2.1
902 + 10074 mRNA_1706 0.66 -0.7
949 - 10074 mRNA_1706 0.71 +0.8
949 - 10074 mRNA_1706 0.71 -0.3
950 + 10074 mRNA_1706 0.71 +2.4
974 - 10074 mRNA_1706 0.74 -1.4
1,016 + 10074 mRNA_1706 0.79 -0.0
1,065 + 10074 mRNA_1706 0.85 -0.8
1,118 + -1.0
1,142 + -0.1
1,155 + +0.6
1,272 - +1.1
1,281 + +0.1
1,573 + 10075 mRNA_1707 0.23 -0.1
1,625 + 10075 mRNA_1707 0.27 +3.5
1,625 + 10075 mRNA_1707 0.27 -0.0
1,628 + 10075 mRNA_1707 0.27 +0.8
1,646 + 10075 mRNA_1707 0.28 -0.8
1,649 - 10075 mRNA_1707 0.28 +1.4
1,680 + 10075 mRNA_1707 0.30 +0.4
1,781 + 10075 mRNA_1707 0.36 +0.2
1,926 + 10075 mRNA_1707 0.45 -0.7
1,996 + 10075 mRNA_1707 0.49 +2.4
2,005 - 10075 mRNA_1707 0.50 -0.9
2,010 - 10075 mRNA_1707 0.50 +1.8
2,033 + 10075 mRNA_1707 0.51 +0.1
2,068 + 10075 mRNA_1707 0.53 +0.7
2,076 + 10075 mRNA_1707 0.54 +1.3
2,209 - 10075 mRNA_1707 0.62 +1.5
2,352 + 10075 mRNA_1707 0.71 +0.9
2,449 - 10075 mRNA_1707 0.77 +1.1
2,472 - 10075 mRNA_1707 0.78 -0.8
2,475 + 10075 mRNA_1707 0.78 +0.9
2,501 + 10075 mRNA_1707 0.80 +0.5
2,923 + +2.0
3,038 - -0.1
3,062 + -0.5
3,198 - +0.2
3,200 + +0.2
3,208 + -0.2
3,333 + +0.3
3,347 - -0.7
3,348 - -0.4
3,381 + -0.9
3,459 + +1.6
3,634 - +1.8
3,791 + -1.4

Or see this region's nucleotide sequence