Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1711

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10078 and 10079 are separated by 319 nucleotides10079 and 10080 are separated by 494 nucleotides mRNA_1710: 10078 - Hypothetical Protein, at 7,999 to 8,750 10078 mRNA_1711: 10079 - K01887 RARS, argS arginyl-tRNA synthetase, at 9,070 to 11,520 10079 mRNA_1712: 10080 - KOG2131 Uncharacterized conserved protein, contains JmjC domain, at 12,015 to 13,653 10080

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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8,234 + 10078 mRNA_1710 0.31 +0.5
8,331 + 10078 mRNA_1710 0.44 -1.8
8,341 - 10078 mRNA_1710 0.45 +1.2
8,493 - 10078 mRNA_1710 0.66 -0.4
8,728 + -0.4
8,779 + +1.1
8,811 + -1.3
8,838 + -0.1
8,963 + +0.1
8,965 - +0.8
11,779 - +1.9
11,926 + -0.9
11,942 - +0.6
12,141 - -0.1
12,215 - 10080 mRNA_1712 0.12 -0.3
12,434 - 10080 mRNA_1712 0.26 +0.8

Or see this region's nucleotide sequence