Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1715

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10082 and 10083 are separated by 545 nucleotides10083 and 10084 are separated by 306 nucleotides mRNA_1714: 10082 - K01372 BLMH, pepC bleomycin hydrolase, at 15,983 to 18,222 10082 mRNA_1715: 10083 - K18328 DBR1 lariat debranching enzyme, at 18,768 to 21,096 10083 mRNA_1716: 10084 - K14799 TSR1 pre-rRNA-processing protein TSR1, at 21,403 to 24,344 10084

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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17,781 - 10082 mRNA_1714 0.80 -1.2
18,016 + +1.9
18,044 - +1.6
18,074 + -0.4
18,224 + -2.1
18,235 + -0.2
18,309 + +0.7
18,473 + +0.1
18,600 + +0.2
18,608 + +2.0
18,621 + +1.7
18,775 + +0.7
18,959 - +1.7
20,705 + 10083 mRNA_1715 0.83 -1.8
21,072 + +1.7
21,128 - +2.6
21,222 - -0.2
21,245 + +0.1
21,394 - -0.5
21,395 - -0.1
21,404 - +0.1

Or see this region's nucleotide sequence