Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1747

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10114 and 10115 are separated by 586 nucleotides10115 and 10116 are separated by 477 nucleotides mRNA_1746: 10114 - KOG2897 DNA-binding protein YL1 and related proteins, at 104,226 to 106,402 10114 mRNA_1747: 10115 - Hypothetical Protein, at 106,989 to 107,598 10115 mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108,076 to 110,507 10116

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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106,560 - +1.7
106,581 + +1.6
106,719 - +0.2
106,730 - -1.7
106,742 + +0.3
106,886 + +0.1
107,024 + +1.1
107,368 - 10115 mRNA_1747 0.62 +0.3
107,437 - 10115 mRNA_1747 0.73 +0.6
107,453 + 10115 mRNA_1747 0.76 +0.6
107,563 - +0.0
107,584 + -0.9
107,730 - -2.0
107,757 - +0.2
107,781 - +0.3
107,819 + +0.2
108,057 - -0.2
108,058 + -1.1
108,398 + 10116 mRNA_1748 0.13 +2.2

Or see this region's nucleotide sequence