Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1758

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10125 and 10126 are separated by 706 nucleotides mRNA_1757: 10125 - KOG1426 FOG RCC1 domain, at 126,348 to 129,051 10125 mRNA_1758: 10126 - KOG2998 Uncharacterized conserved protein, at 129,758 to 131,068 10126

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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128,899 + +2.4
129,035 + -0.7
129,063 + +1.6
129,210 + +1.0
129,650 - -0.6
129,654 - +1.1
129,675 + -0.4
129,805 + -0.3
130,274 + 10126 mRNA_1758 0.39 -0.5
130,528 + 10126 mRNA_1758 0.59 +0.7
130,812 - 10126 mRNA_1758 0.80 +0.0
131,233 - -0.3
131,252 + +3.3
131,363 - +3.0
131,400 - -1.0
131,410 + -1.9
131,531 - -0.1
131,548 + +0.1
131,555 - +1.9
131,560 + +1.2
131,686 - -0.4
131,690 + +0.2
131,694 - +0.6
131,830 - -0.7
131,833 - +0.1
131,859 + +0.6
131,987 + -0.3
131,998 - -0.4
132,026 + +0.4

Or see this region's nucleotide sequence