Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1759

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10127 and 10128 are separated by 429 nucleotides mRNA_1759: 10127 - K13345 PEX12, PAF3 peroxin-12, at 132,751 to 134,282 10127 mRNA_1760: 10128 - KOG0940 Ubiquitin protein ligase RSP5/NEDD4, at 134,712 to 138,303 10128

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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131,830 - -0.7
131,833 - +0.1
131,859 + +0.6
131,987 + -0.3
131,998 - -0.4
132,026 + +0.4
132,157 - +0.2
132,305 + +1.8
132,731 + +2.1
134,295 - +0.9
134,307 + +1.0
134,324 + +0.8
134,613 - +2.3
134,614 + -0.7

Or see this region's nucleotide sequence