Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1802

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10169 and 10170 are separated by 74 nucleotides10170 and 10171 are separated by 292 nucleotides mRNA_1801: 10169 - HMMPfam-Survival motor neuron (SMN) interacting protein 1 (SIP1)-PF04938, at 231,185 to 232,547 10169 mRNA_1802: 10170 - K05546 GANAB alpha 1,3-glucosidase, at 232,622 to 238,014 10170 mRNA_1803: 10171 - K15205 TFC6 transcription factor C subunit 6, at 238,307 to 241,610 10171

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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232,772 - -0.3
232,802 - -0.3
232,814 + +1.1
233,400 - 10170 mRNA_1802 0.14 +0.7
233,489 - 10170 mRNA_1802 0.16 -0.5
233,511 + 10170 mRNA_1802 0.16 -0.0
233,561 - 10170 mRNA_1802 0.17 -0.4
234,402 - 10170 mRNA_1802 0.33 +1.1
234,419 + 10170 mRNA_1802 0.33 +0.2
234,709 - 10170 mRNA_1802 0.39 -0.5
234,715 + 10170 mRNA_1802 0.39 +0.0
234,817 - 10170 mRNA_1802 0.41 -0.1
234,834 + 10170 mRNA_1802 0.41 +0.2
235,419 + 10170 mRNA_1802 0.52 +1.9
235,801 - 10170 mRNA_1802 0.59 +0.6
236,293 + 10170 mRNA_1802 0.68 +0.9
236,670 + 10170 mRNA_1802 0.75 +1.3
236,773 + 10170 mRNA_1802 0.77 +2.1
236,876 - 10170 mRNA_1802 0.79 -1.2
237,073 - 10170 mRNA_1802 0.83 -0.1
237,759 + -0.9
237,930 - +0.3
238,197 - -0.5
238,304 - -1.6

Or see this region's nucleotide sequence