Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1808

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10176 and 10177 are separated by 777 nucleotides mRNA_1808: 10176 - Hypothetical Protein, at 257,395 to 258,066 10176 mRNA_1809: 10177 - Hypothetical Protein, at 258,844 to 259,797 10177

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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256,422 - +0.8
256,431 - +0.0
256,446 - +0.3
256,457 + +0.9
256,489 - -0.6
256,491 - +0.8
256,493 + -0.7
256,501 + -1.3
256,503 - -0.3
256,506 + -0.5
256,506 + +0.8
256,541 - +0.3
256,551 + -0.0
256,573 - -0.2
256,588 - +1.0
256,697 - -0.4
256,731 + -0.6
257,353 + +0.2
257,603 + 10176 mRNA_1808 0.31 -0.3
257,971 - 10176 mRNA_1808 0.86 +1.1
257,981 - 10176 mRNA_1808 0.87 -1.1
257,986 + 10176 mRNA_1808 0.88 +0.3
258,079 + +0.8
258,173 - -0.6
258,200 - +0.9
258,204 + +1.3
258,204 - +3.2
258,229 - +0.8
258,229 + +0.1
258,234 - -0.0
258,262 + +0.7
258,276 - -0.0
258,290 - +0.2
258,325 + +1.0
258,348 + +0.0
258,454 + +1.4
258,526 + -0.1
258,558 + +0.3
258,623 + -1.2
258,625 - -0.5
258,645 - +1.2
258,653 + -0.3
258,675 + +0.2
258,680 - +1.1
258,700 + -0.8
258,727 + +0.5
258,731 + +2.2
258,732 - +1.0
258,734 - -0.9
258,735 + +2.0
258,739 + +1.5
258,740 + +1.4
258,763 + +1.7
258,770 + +1.0
258,773 + +1.6
258,795 - -0.7
258,808 + -1.5
258,808 + -0.8

Or see this region's nucleotide sequence