Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1810

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10177 and 10178 are separated by 457 nucleotides10178 and 10179 are separated by 359 nucleotides mRNA_1809: 10177 - Hypothetical Protein, at 258,844 to 259,797 10177 mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260,255 to 261,213 10178 mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261,573 to 264,889 10179

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
259,522 + 10177 mRNA_1809 0.71 +1.0
260,103 + +0.6
260,425 + 10178 mRNA_1810 0.18 +0.2
260,981 + 10178 mRNA_1810 0.76 -0.2
260,996 - 10178 mRNA_1810 0.77 -0.1
260,999 + 10178 mRNA_1810 0.78 -0.6
261,007 + 10178 mRNA_1810 0.78 +0.4
261,013 - 10178 mRNA_1810 0.79 +0.1
261,015 - 10178 mRNA_1810 0.79 +1.3
261,156 - +1.8
261,169 - -0.3
261,174 - -0.7
261,185 - +0.9
261,299 - +0.2
261,302 + +0.5
261,314 + -0.2
261,348 - +1.7
261,356 + +4.1
261,363 - +1.0
261,364 - +0.4
261,481 - +1.5
261,648 - +1.9
261,654 - -0.4

Or see this region's nucleotide sequence