Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1826

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10193 and 10194 are separated by 224 nucleotides mRNA_1825: 10193 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 304,648 to 308,455 10193 mRNA_1826: 10194 - Hypothetical Protein, at 308,680 to 309,068 10194

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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307,760 + 10193 mRNA_1825 0.82 +1.7
307,792 + 10193 mRNA_1825 0.83 +1.2
308,037 - 10193 mRNA_1825 0.89 +0.4
308,507 - +0.5
308,633 + +1.1
308,647 + +1.9
308,654 - +0.4
308,777 - 10194 mRNA_1826 0.25 +0.3
308,780 - 10194 mRNA_1826 0.26 -0.3
308,789 + 10194 mRNA_1826 0.28 -0.4
308,847 + 10194 mRNA_1826 0.43 +1.6
308,991 - 10194 mRNA_1826 0.80 +1.1

Or see this region's nucleotide sequence