Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1836

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10204 and 10205 are separated by 495 nucleotides mRNA_1836: 10204 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 329,163 to 331,495 10204 mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331,991 to 335,971 10205

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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328,228 - -0.7
328,263 + +1.2
328,654 - -1.0
328,665 - -0.3
328,677 + -0.6
328,679 + +1.3
328,819 - -0.2
328,823 - -0.0
328,824 - +1.1
328,828 + -0.0
328,842 + -1.8
328,846 - -0.8
328,877 - -1.1
328,891 + -0.2
328,971 - +0.2
328,991 - -0.3
328,991 + -0.6
328,994 + -2.0
329,007 + -0.5
329,009 - +1.1
329,013 + -0.2
329,022 + -2.5
329,022 - +0.1
329,023 - +0.1
329,030 + -0.8
329,072 + +0.4
329,072 - +0.3
329,077 + -0.0
329,078 - -0.3
329,080 - +0.8
329,090 - -0.3
329,094 - +0.7
329,097 + -1.0
329,110 + -0.8
329,111 - +3.3
329,114 + +0.3
329,127 + +0.3
329,136 + +0.8
329,259 - -2.0
329,269 + +0.8
329,392 + +0.7
329,519 + 10204 mRNA_1836 0.15 +0.6
329,542 + 10204 mRNA_1836 0.16 +0.8
329,544 - 10204 mRNA_1836 0.16 +0.4
329,872 + 10204 mRNA_1836 0.30 +0.5
330,250 + 10204 mRNA_1836 0.47 +1.7
330,334 - 10204 mRNA_1836 0.50 +1.1
330,629 + 10204 mRNA_1836 0.63 +1.8
330,698 - 10204 mRNA_1836 0.66 +0.9
330,902 - 10204 mRNA_1836 0.75 -0.7
331,610 + +2.3
331,748 - -1.0
331,855 + -0.1
331,862 - +1.8
331,868 - -0.3
331,878 + +0.1
331,903 + +1.4
331,988 - +1.0
332,007 - +2.4
332,013 - +1.3
332,014 - -0.5
332,014 + -1.6
332,014 + -0.7
332,014 - -1.7
332,015 + -1.1
332,039 + +1.1
332,055 + +2.0
332,174 - +3.2
332,315 + -0.2
332,343 + -1.6
332,475 - 10205 mRNA_1837 0.12 +0.4

Or see this region's nucleotide sequence