Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1861

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10228 and 10229 are separated by 141 nucleotides10229 and 10230 are separated by 423 nucleotides mRNA_1860: 10228 - K02259 COX15 cytochrome c oxidase assembly protein subunit 15, at 391,370 to 393,300 10228 mRNA_1861: 10229 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 393,442 to 393,978 10229 mRNA_1862: 10230 - Interpro DNA replication factor Cdt1 C-terminal domain 0, at 394,402 to 396,759 10230

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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393,359 + -0.2
393,396 + +1.8
394,285 + -0.9
394,285 + -0.6
394,300 - -0.5
394,305 + +1.0
394,413 - +2.2
394,590 + -0.4
394,745 + 10230 mRNA_1862 0.15 -1.0

Or see this region's nucleotide sequence