Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1905

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10272 and 10273 are separated by 205 nucleotides mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479,057 to 480,594 10272 mRNA_1905: 10273 - Hypothetical Protein, at 480,800 to 481,665 10273

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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479,861 + 10272 mRNA_1904 0.52 +0.0
480,169 + 10272 mRNA_1904 0.72 +0.0
480,416 + 10272 mRNA_1904 0.88 +0.1
480,691 - -2.2
480,696 + +1.8
480,706 + -0.1
480,715 + +2.0
480,723 + -1.0
480,820 + -0.9
480,831 - -0.4
480,841 + -0.6
480,841 + +0.4
480,857 + +1.7
480,905 + 10273 mRNA_1905 0.12 +3.4
480,930 - 10273 mRNA_1905 0.15 -0.3
480,938 + 10273 mRNA_1905 0.16 +0.1
480,976 + 10273 mRNA_1905 0.20 +1.2
480,982 - 10273 mRNA_1905 0.21 -0.6
480,997 + 10273 mRNA_1905 0.23 +0.9
481,054 + 10273 mRNA_1905 0.29 +0.2
481,093 + 10273 mRNA_1905 0.34 +0.9
481,106 + 10273 mRNA_1905 0.35 +0.8
481,107 - 10273 mRNA_1905 0.35 -0.2
481,113 + 10273 mRNA_1905 0.36 +0.6
481,114 + 10273 mRNA_1905 0.36 -0.2
481,129 - 10273 mRNA_1905 0.38 +0.2
481,132 + 10273 mRNA_1905 0.38 +2.1
481,135 + 10273 mRNA_1905 0.39 +1.5
481,135 + 10273 mRNA_1905 0.39 +0.8
481,158 + 10273 mRNA_1905 0.41 +0.8
481,170 - 10273 mRNA_1905 0.43 +0.9
481,190 + 10273 mRNA_1905 0.45 -0.0
481,202 + 10273 mRNA_1905 0.46 +0.7
481,213 + 10273 mRNA_1905 0.48 +0.8
481,220 + 10273 mRNA_1905 0.48 -0.6
481,235 - 10273 mRNA_1905 0.50 +0.4
481,236 + 10273 mRNA_1905 0.50 +1.0
481,244 + 10273 mRNA_1905 0.51 +1.6
481,314 - 10273 mRNA_1905 0.59 +0.4
481,315 + 10273 mRNA_1905 0.59 -0.0
481,334 + 10273 mRNA_1905 0.62 +2.6
481,378 - 10273 mRNA_1905 0.67 +2.4
481,384 + 10273 mRNA_1905 0.67 +0.9
481,399 - 10273 mRNA_1905 0.69 +1.3
481,403 - 10273 mRNA_1905 0.70 -0.1
481,425 - 10273 mRNA_1905 0.72 -1.2
481,432 + 10273 mRNA_1905 0.73 -1.5
481,439 + 10273 mRNA_1905 0.74 +1.2
481,453 - 10273 mRNA_1905 0.75 -0.8
481,454 + 10273 mRNA_1905 0.76 -1.0
481,455 - 10273 mRNA_1905 0.76 -1.1
481,458 + 10273 mRNA_1905 0.76 -1.6
481,465 - 10273 mRNA_1905 0.77 +0.3
481,468 + 10273 mRNA_1905 0.77 -0.3
481,469 + 10273 mRNA_1905 0.77 +0.4
481,485 + 10273 mRNA_1905 0.79 +0.6
481,489 - 10273 mRNA_1905 0.80 +0.5
481,501 - 10273 mRNA_1905 0.81 +0.9
481,536 + 10273 mRNA_1905 0.85 -0.5
481,549 - 10273 mRNA_1905 0.86 +0.5
481,609 + -1.4
481,613 + -0.3
481,620 + -0.0
481,631 - -1.5
481,636 + +0.6
481,646 + -1.3
481,662 + +0.7
481,679 + +0.2
481,695 + -0.8
481,697 + +0.6
481,719 - -0.4
481,733 - +1.0
481,770 + -0.2
481,772 + +1.6
481,816 + -0.2
481,816 + -1.8
481,819 + +0.3
481,826 - -1.1
481,829 + -0.2
481,830 - -1.2
481,832 - +0.1
481,842 - -1.0
481,853 + +0.0
481,857 - +0.3
481,859 + +0.0
481,864 - -0.3
481,866 - +2.0
481,867 + +0.6
481,867 - -0.4
481,869 + -0.7
481,869 - +0.5
481,870 - -1.0
481,873 - +1.2
481,880 + +0.4
481,881 + +1.4
481,882 + +0.5
481,890 - +0.4
481,890 + -1.6
481,893 + -0.1
481,895 - +0.9
481,896 + +0.5
481,897 - -0.7
481,897 + -0.2
481,897 + +1.2
481,898 + -0.0
481,898 + +1.3
481,900 + +1.9
481,903 - -1.0
481,904 - -0.3
481,905 - +0.9
481,909 + -1.0
481,909 + +0.4
481,910 + -0.9
481,915 + +3.2
481,916 + +0.3
481,918 + -0.7
481,920 + -0.3
481,920 - +1.0
481,921 + -1.6
481,926 + +1.9
481,948 + -2.0
481,950 - +0.4
481,952 + +0.1
481,990 - +0.9
482,010 - +0.6
482,010 - +0.7
482,037 - -0.4
482,141 + -1.3
482,152 - -1.6
482,167 + +0.3
482,173 + +0.3
482,180 - +0.4
482,220 - +1.3
482,221 + +0.8
482,222 - +1.6
482,235 + +1.5
482,375 + +1.8
482,379 + +1.2
482,382 + -0.8
482,386 - -0.3
482,387 - +1.4
482,391 + +1.5
482,395 - +0.3
482,397 + -0.1
482,418 - +0.9
482,435 + -0.3
482,435 + +0.5
482,439 + +1.1
482,442 - +0.3
482,443 + -0.7
482,444 - +1.2
482,445 - +0.1
482,445 + -0.8
482,446 + -0.2
482,447 - +1.2
482,449 + +0.2
482,450 + +0.2
482,451 - -3.1
482,451 - -0.0
482,456 - -0.8
482,458 - -0.9
482,461 - +2.4
482,464 + +1.6
482,464 + +0.7
482,471 + +1.3
482,472 - +0.2
482,473 + -0.6
482,474 - -0.3
482,474 + -0.6
482,475 + +2.9
482,481 - +0.7
482,483 - -0.8
482,484 + +0.6
482,485 - +1.3
482,490 - +0.2
482,490 - -1.5
482,492 + -0.1
482,494 - +1.0
482,494 - +2.4
482,495 - +2.5
482,495 - +1.0
482,507 - -0.0
482,509 + +1.4
482,524 - -0.1
482,635 - +0.3
482,653 - +0.9
482,654 - -0.3
482,659 - -0.3

Or see this region's nucleotide sequence