Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1918

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10286 and 10287 are separated by 472 nucleotides mRNA_1918: 10286 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 512,631 to 512,981 10286 mRNA_1919: 10287 - K11340 ACTL6A, INO80K actin-like protein 6A, at 513,454 to 515,296 10287

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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511,735 - +0.4
511,882 - +1.4
511,895 + -0.4
511,896 + -0.1
512,045 + -1.0
512,070 - -0.8
512,356 + +1.0
512,610 - +1.0
512,627 + -0.4
512,782 - 10286 mRNA_1918 0.43 -0.6
513,049 - +0.3
513,063 + +0.0
513,201 - -1.1
513,364 + -1.3

Or see this region's nucleotide sequence