Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1948

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10316 and 10317 are separated by 491 nucleotides mRNA_1948: 10316 - K08176 PHO84 MFS transporter, PHS family, inorganic phosphate transporter, at 580,409 to 582,858 10316 mRNA_1949: 10317 - KOG0254 Predicted transporter (major facilitator superfamily), at 583,350 to 585,589 10317

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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579,452 - +3.5
579,452 - -1.1
579,482 + +1.2
579,539 - -0.2
579,593 + +0.2
579,609 + +0.6
579,661 + +0.2
579,704 - +0.7
579,717 - +1.7
579,729 - +1.8
579,729 - +0.5
579,735 - +1.0
579,742 - +1.8
579,746 - -0.4
579,755 - -0.3
579,780 - -0.7
579,782 + +0.2
579,783 + -0.3
579,797 + -1.4
579,816 + -0.2
579,830 + +0.6
579,849 - +0.9
579,868 - +0.9
579,870 - +0.5
579,882 - +0.6
579,887 + -0.9
579,887 + +0.9
579,890 - +0.4
579,899 + -0.2
579,900 + -0.0
579,906 + -0.8
579,912 + +0.2
579,976 - -0.0
579,990 - -0.1
579,990 + +0.6
579,990 + -0.8
579,991 - -0.3
579,991 - -1.2
579,991 - +2.8
580,006 - +0.3
580,010 - +0.3
580,011 + +1.1
580,012 + -3.3
580,014 - +1.0
580,015 - -0.1
580,020 + +1.2
580,035 - -0.9
580,039 + +1.3
580,040 + +2.1
580,042 - -1.2
580,051 - +0.6
580,179 - -0.0
580,180 - -2.9
580,185 - +0.1
580,185 + +0.4
580,195 - -0.6
580,197 - -0.7
580,199 - -0.2
580,204 + +0.8
580,210 + +0.3
580,224 - +0.7
580,332 + +0.8
580,358 - +1.8
580,920 - 10316 mRNA_1948 0.21 +3.0
580,972 + 10316 mRNA_1948 0.23 +0.1
581,211 - 10316 mRNA_1948 0.33 +1.3
581,300 - 10316 mRNA_1948 0.36 -0.2
581,357 + 10316 mRNA_1948 0.39 -1.9
581,363 - 10316 mRNA_1948 0.39 -0.3
581,399 + 10316 mRNA_1948 0.40 +0.3
581,519 + 10316 mRNA_1948 0.45 +0.1
581,751 - 10316 mRNA_1948 0.55 +1.5
581,783 - 10316 mRNA_1948 0.56 +0.5
581,890 - 10316 mRNA_1948 0.60 +1.1
581,960 + 10316 mRNA_1948 0.63 -0.2
582,339 + 10316 mRNA_1948 0.79 +1.4
582,858 + +0.1
582,866 + +1.4
582,871 - +1.2
582,882 + +1.7
583,075 + +0.0
583,127 - -1.5
583,402 + +0.5
583,847 + 10317 mRNA_1949 0.22 +3.4

Or see this region's nucleotide sequence