Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1952

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10319 and 10320 are separated by 377 nucleotides10320 and 10321 are separated by 507 nucleotides mRNA_1951: 10319 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 588,151 to 591,426 10319 mRNA_1952: 10320 - K14564 NOP56 nucleolar protein 56, at 591,804 to 593,975 10320 mRNA_1953: 10321 - K18442 ARFGEF, BIG brefeldin A-inhibited guanine nucleotide-exchange protein, at 594,483 to 601,309 10321

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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591,329 + +0.6
594,101 + +1.0
594,128 - -0.0
594,131 - +0.2
594,133 + +0.9
594,139 + +2.5
594,141 - +0.1
594,144 - -0.4
594,260 - +0.1
594,260 - -0.3
594,279 + +0.2
594,281 - -0.1
594,289 - +0.2
594,291 + +2.4
594,291 + +0.9
594,296 + -0.1
594,311 - +1.4
594,313 - +0.1
594,317 + -1.3
594,439 + +2.2
594,440 + +1.5

Or see this region's nucleotide sequence