Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1959

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10326 and 10327 are separated by 675 nucleotides10327 and 10328 are separated by 219 nucleotides mRNA_1958: 10326 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 610,306 to 612,524 10326 mRNA_1959: 10327 - Hypothetical Protein, at 613,200 to 613,373 10327 mRNA_1960: 10328 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 613,593 to 615,935 10328

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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612,347 - -0.3
612,365 + +1.2
612,645 - +0.2
612,667 - -1.1
612,806 + +0.5
612,821 + +0.3
613,127 + +1.2
613,434 - -0.3
613,443 + +1.0
613,762 + +0.4
614,007 - 10328 mRNA_1960 0.18 +0.7
614,067 - 10328 mRNA_1960 0.20 +0.2
614,201 - 10328 mRNA_1960 0.26 -1.1
614,213 + 10328 mRNA_1960 0.26 -0.4

Or see this region's nucleotide sequence