Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1978

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10345 and 10346 are separated by 211 nucleotides10346 and 10347 are separated by 406 nucleotides mRNA_1977: 10345 - HMMPfam-Eukaryotic initiation factor 4E-PF01652,SUPERFAMILY--SSF55418, at 656,305 to 657,635 10345 mRNA_1978: 10346 - K14409 SMG7, EST1C protein SMG7, at 657,847 to 661,571 10346 mRNA_1979: 10347 - KOG2362 Uncharacterized Fe-S protein, at 661,978 to 663,393 10347

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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657,715 + +0.8
657,974 - -1.3
657,975 + +0.5
657,991 + +1.4
657,995 - +1.0
657,995 + -0.5
658,346 + 10346 mRNA_1978 0.13 +0.7
658,733 + 10346 mRNA_1978 0.24 +0.3
658,870 + 10346 mRNA_1978 0.27 -0.9
658,870 + 10346 mRNA_1978 0.27 +1.0
658,878 - 10346 mRNA_1978 0.28 +0.3
659,311 + 10346 mRNA_1978 0.39 +0.9
659,601 - 10346 mRNA_1978 0.47 +0.2
659,909 - 10346 mRNA_1978 0.55 -0.3
660,221 - 10346 mRNA_1978 0.64 +1.0
660,313 + 10346 mRNA_1978 0.66 -0.1
660,327 + 10346 mRNA_1978 0.67 +0.4
660,350 + 10346 mRNA_1978 0.67 +0.9
660,453 + 10346 mRNA_1978 0.70 +0.2
660,523 - 10346 mRNA_1978 0.72 -0.6
660,626 + 10346 mRNA_1978 0.75 +0.5
660,738 + 10346 mRNA_1978 0.78 +0.8
661,066 - 10346 mRNA_1978 0.86 +0.2
661,190 + 10346 mRNA_1978 0.90 -0.6
662,067 + +0.7
662,110 + +0.3
662,254 - 10347 mRNA_1979 0.19 +1.2

Or see this region's nucleotide sequence