Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1996

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10363 and 10364 are separated by 219 nucleotides10364 and 10365 are separated by 600 nucleotides mRNA_1995: 10363 - KOG0062 ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b, at 699,690 to 700,377 10363 mRNA_1996: 10364 - KOG0379 Kelch repeat-containing proteins, at 700,597 to 701,909 10364 mRNA_1997: 10365 - KOG0627 Heat shock transcription factor, at 702,510 to 703,691 10365

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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699,707 + -2.4
699,843 - 10363 mRNA_1995 0.22 +0.1
699,942 - 10363 mRNA_1995 0.37 +0.1
700,004 + 10363 mRNA_1995 0.46 +0.9
700,441 + +0.1
700,476 + +1.6
700,538 + +0.7
700,745 - 10364 mRNA_1996 0.11 -0.4
701,029 - 10364 mRNA_1996 0.33 +0.1
701,042 - 10364 mRNA_1996 0.34 -0.5
701,185 + 10364 mRNA_1996 0.45 -0.5
701,454 + 10364 mRNA_1996 0.65 -0.3
701,862 - -0.3
701,888 - +1.7
701,905 - +0.8
701,921 + +0.8
701,926 + -0.5
701,961 - +0.4
701,988 + -0.2
702,084 - +1.0
702,089 - +0.2
702,091 + -0.3
702,234 - +0.3
702,236 - +1.1
702,243 - -0.2
702,274 + +0.3
702,282 + +0.7
702,309 - +1.1
702,333 - +3.4
702,341 - +1.5
702,354 + +0.8
702,364 + -2.9
702,365 - +0.8
702,368 + -1.5
702,380 + -0.0
702,384 + +1.6
702,408 + +1.4
702,481 + -0.5
702,500 - -1.5

Or see this region's nucleotide sequence