Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2009

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10376 and 10377 are separated by 847 nucleotides10377 and 10378 are separated by 351 nucleotides mRNA_2008: 10376 - K02929 RP-L44e, RPL44 large subunit ribosomal protein L44e, at 731,652 to 732,253 10376 mRNA_2009: 10377 - BLAST ankyrin [Cenococcum geophilum 1.58], at 733,101 to 734,076 10377 mRNA_2010: 10378 - KOG2533 Permease of the major facilitator superfamily, at 734,428 to 736,399 10378

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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732,813 - -0.1
732,826 - -0.5
732,998 + +1.2
733,365 + 10377 mRNA_2009 0.27 +0.6
733,388 - 10377 mRNA_2009 0.29 +0.4
733,634 + 10377 mRNA_2009 0.55 +0.7
733,681 - 10377 mRNA_2009 0.59 +1.4
733,788 - 10377 mRNA_2009 0.70 +1.1
734,465 - +0.2
734,623 - +0.7
734,692 - 10378 mRNA_2010 0.13 +2.1

Or see this region's nucleotide sequence