Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2052

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10419 and 10420 are separated by 913 nucleotides10420 and 10421 are separated by 269 nucleotides mRNA_2051: 10419 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 836,699 to 837,795 10419 mRNA_2052: 10420 - KOG1399 Flavin-containing monooxygenase, at 838,709 to 841,749 10420 mRNA_2053: 10421 - KOG2450 Aldehyde dehydrogenase, at 842,019 to 844,467 10421

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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837,827 - -0.5
837,959 - +0.4
838,000 - -0.1
838,130 + +1.5
838,279 - -0.3
838,309 + +1.0
838,414 + -0.7
838,483 + -2.2
838,535 - +0.2
838,538 + -0.3
838,568 - +2.2
838,569 + +0.1
838,570 + +1.3
838,571 + +0.2
838,571 + -0.4
838,572 + +1.2
838,579 + +0.7
838,580 + -0.2
838,583 + -1.8
838,587 + +0.7
838,595 + -0.3
838,596 + +2.4
838,597 + -1.9
838,760 + +1.5
838,909 + +0.0
839,087 + 10420 mRNA_2052 0.12 +0.2
839,170 + 10420 mRNA_2052 0.15 -0.9
839,172 - 10420 mRNA_2052 0.15 +1.5
839,326 + 10420 mRNA_2052 0.20 +2.1
839,443 - 10420 mRNA_2052 0.24 -1.6
839,663 + 10420 mRNA_2052 0.31 +0.5
839,686 - 10420 mRNA_2052 0.32 -1.0
839,693 + 10420 mRNA_2052 0.32 +0.8
839,794 + 10420 mRNA_2052 0.36 +0.7
840,073 + 10420 mRNA_2052 0.45 -1.9
840,229 - 10420 mRNA_2052 0.50 +1.3
840,502 + 10420 mRNA_2052 0.59 +0.1
840,564 - 10420 mRNA_2052 0.61 +0.4
840,753 - 10420 mRNA_2052 0.67 +0.3
840,789 - 10420 mRNA_2052 0.68 -0.1
840,791 + 10420 mRNA_2052 0.68 +1.8
841,042 + 10420 mRNA_2052 0.77 +1.1
841,219 - 10420 mRNA_2052 0.83 +0.9
841,221 + 10420 mRNA_2052 0.83 +2.1
841,411 - 10420 mRNA_2052 0.89 +1.5
841,483 + -0.3
841,751 + -0.4
841,808 - +0.7
841,949 + -0.3
841,971 - +1.4
842,060 - -0.5
842,112 + +0.4
842,120 - +0.2
842,257 - +0.5
842,523 - 10421 mRNA_2053 0.21 -1.4
842,523 - 10421 mRNA_2053 0.21 +1.8
842,669 - 10421 mRNA_2053 0.27 +0.4
842,725 - 10421 mRNA_2053 0.29 +1.8

Or see this region's nucleotide sequence