Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2085

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10453 and 10454 are separated by 457 nucleotides mRNA_2085: 10453 - BLAST nucleotide-diphospho-sugar transferase [Sanghuangporu..., at 38,392 to 39,762 10453 mRNA_2086: 10454 - Hypothetical Protein, at 40,220 to 41,311 10454

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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37,481 - -0.1
37,483 + -0.4
37,492 - +0.4
37,496 + +0.3
37,513 - +3.6
37,569 + +0.5
37,615 + +0.5
37,615 - -0.3
37,631 + +0.4
37,635 - +1.6
37,638 + +3.1
37,639 + +1.5
37,640 - +2.0
37,644 + -1.5
37,830 - -0.3
37,837 + +1.6
37,846 + +2.2
37,923 + +0.6
37,940 + +1.0
37,940 - +1.0
38,103 - -0.4
38,227 - +0.2
38,943 - 10453 mRNA_2085 0.40 +0.3
39,149 + 10453 mRNA_2085 0.55 -0.8
39,228 - 10453 mRNA_2085 0.61 +0.0
39,379 - 10453 mRNA_2085 0.72 +0.6
39,675 - +0.5
40,069 + -1.9
40,077 - -1.8
40,209 - +1.5
40,228 + +0.2
40,312 + +1.4
40,315 - +1.4
40,695 + 10454 mRNA_2086 0.43 +0.3
40,700 - 10454 mRNA_2086 0.44 +1.0
40,718 - 10454 mRNA_2086 0.46 +0.7
40,718 + 10454 mRNA_2086 0.46 +0.7

Or see this region's nucleotide sequence