Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2101

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10468 and 10469 are separated by 179 nucleotides10469 and 10470 are separated by 324 nucleotides mRNA_2100: 10468 - K13184 DHX9 ATP-dependent RNA helicase A, at 68,093 to 72,993 10468 mRNA_2101: 10469 - K12041 SLC9A6_7, NHE6_7 solute carrier family 9 (sodium/hydrogen exchanger), member 6/7, at 73,173 to 76,460 10469 mRNA_2102: 10470 - SUPERFAMILY--SSF53067, at 76,785 to 80,345 10470

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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73,021 + +3.1
73,102 + +0.6
73,231 - +0.0
73,733 + 10469 mRNA_2101 0.17 +1.8
73,968 - 10469 mRNA_2101 0.24 -0.7
74,215 + 10469 mRNA_2101 0.32 -0.5
74,306 - 10469 mRNA_2101 0.34 +0.9
74,422 + 10469 mRNA_2101 0.38 +1.4
74,689 - 10469 mRNA_2101 0.46 -0.4
75,869 - 10469 mRNA_2101 0.82 +2.0
76,021 + 10469 mRNA_2101 0.87 -0.4
76,128 - 10469 mRNA_2101 0.90 -0.2
76,551 - -0.0
76,703 + +0.5
76,919 + -0.0
76,927 + +1.8
77,013 + +0.7
77,206 + 10470 mRNA_2102 0.12 +1.8
77,264 + 10470 mRNA_2102 0.13 +0.8
77,337 + 10470 mRNA_2102 0.16 +0.7
77,390 + 10470 mRNA_2102 0.17 -0.2

Or see this region's nucleotide sequence